Basic Information
Locus ID:
gene-QYE76_032898
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 196175161 | 196183259 | + | gene-QYE76_032898 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.76 | 127,221.13 Da | 45.49 | 80.45 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 888 | 993 | 6.36569E-49 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 294 | 650 | 4.69646E-81 | - |
| CDD | cd16534 | RING-HC_RNF5_like | 765 | 806 | 1.80387E-13 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 765 | 801 | 1.7E-5 | IPR018957 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 885 | 983 | 1.9E-14 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 306 | 727 | 1.1E-68 | IPR000330 |
| SUPERFAMILY | SSF57850 | RING/U-box | 754 | 809 | 2.95E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 273 | 650 | 3.1E-45 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 659 | 1045 | 2.13E-54 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 749 | 816 | 2.0E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 534 | 651 | 2.2E-28 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 665 | 1044 | 4.0E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 422 | 513 | 1.5E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 266 | 352 | 2.2E-11 | IPR038718 |
| SMART | SM00490 | helicmild6 | 900 | 983 | 3.4E-17 | IPR001650 |
| SMART | SM00487 | ultradead3 | 290 | 631 | 1.1E-25 | IPR014001 |
| SMART | SM00184 | ring_2 | 765 | 805 | 6.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 765 | 801 | 11.161508 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 403 | 612 | 11.930037 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 876 | 1036 | 13.138053 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 780 | 789 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 504 | 543 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 438 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 507 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 212 | - | - |
| Coils | Coil | Coil | 996 | 1016 | - | - |
Gene Ontology
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_047078604.1 | helicase-like transcription factor CHR28 [Lolium rigidum] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6RJP8 | Helicase ATP-binding domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology