Basic Information
Locus ID:
gene-QYE76_032836
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Transposase family tnp2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 193643343 | 193649143 | + | gene-QYE76_032836 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 100,144.27 Da | 49.51 | 73.61 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13952 | Domain of unknown function (DUF4216) | 688 | 764 | 1.2E-21 | IPR025312 |
| Pfam | PF02992 | Transposase family tnp2 | 460 | 562 | 2.9E-52 | IPR004242 |
| SUPERFAMILY | SSF101936 | DNA-binding pseudobarrel domain | 113 | 205 | 8.63E-5 | IPR015300 |
| Gene3D | G3DSA:2.40.330.10 | - | 120 | 223 | 1.2E-5 | IPR015300 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 789 | 812 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 855 | 871 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 789 | 803 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 831 | 871 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051202323.1 | uncharacterized protein LOC127315924 [Lolium perenne] | 0 |
| TrEMBL | I1QI76 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Oryza glaberrima OX=4538 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH01.2693, CH05.4449 |
| Poaceae | Lolium multiflorum | 24 | gene-QYE76_004977, gene-QYE76_006303, gene-QYE76_006527 ... |