Basic Information
Locus ID:
gene-QYE76_032272
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 172683292 | 172692526 | - | gene-QYE76_032272 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 92,943.23 Da | 43.90 | 92.99 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 440 | 606 | 4.69848E-50 | - |
| CDD | cd00303 | retropepsin_like | 213 | 290 | 9.82411E-7 | - |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 400 | 633 | 2.33E-62 | IPR043502 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 402 | 552 | 4.5E-35 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 554 | 606 | 5.7E-12 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 500 | 527 | 4.5E-35 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 194 | 296 | 1.2E-7 | IPR021109 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048602259.1 | uncharacterized protein LOC125580969, partial [Brassica napus] | 0 |
| Q7LHG5 | Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2 | 0 | |
| TrEMBL | A0A2N9F815 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10796 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |