Basic Information
Locus ID:
gene-QYE76_032184
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 168765947 | 168775851 | + | gene-QYE76_032184 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 62,279.30 Da | 26.72 | 105.13 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 427 | 526 | 8.26139E-29 | - |
| CDD | cd00030 | C2 | 256 | 358 | 4.05614E-25 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 64 | 241 | 5.0E-18 | IPR039010 |
| Pfam | PF00168 | C2 domain | 254 | 358 | 6.4E-23 | IPR000008 |
| Pfam | PF00168 | C2 domain | 425 | 519 | 2.4E-26 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 421 | 544 | 5.27E-34 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 252 | 384 | 2.7E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 250 | 389 | 1.7E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 404 | 543 | 2.2E-36 | IPR035892 |
| SMART | SM00239 | C2_3c | 426 | 524 | 1.8E-24 | IPR000008 |
| SMART | SM00239 | C2_3c | 255 | 355 | 3.0E-22 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 59 | 241 | 28.137259 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 232 | 356 | 20.072905 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 407 | 525 | 22.167906 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 442 | 454 | 4.7E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 490 | 498 | 4.7E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 468 | 481 | 4.7E-7 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_047075773.1 | synaptotagmin-5-like [Lolium rigidum] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8I6XYA1 | Synaptotagmin-5 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology