halophFGD

Basic Information

Locus ID: gene-QYE76_031911

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: Reverse transcriptase (RNA-dependent DNA polymerase)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	157084519	157092622	-	gene-QYE76_031911

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.63	144,383.98 Da	40.93	73.63	-0.46

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09272	RNase_HI_RT_Ty1	1056	1197	5.33956E-50	-
Pfam	PF00098	Zinc knuckle	544	560	1.4E-4	IPR001878
Pfam	PF14223	gag-polypeptide of LTR copia-type	351	485	1.1E-19	-
Pfam	PF04827	Plant transposon protein	83	127	7.0E-15	IPR006912
Pfam	PF07727	Reverse transcriptase (RNA-dependent DNA polymerase)	789	971	7.5E-53	IPR013103
Pfam	PF04827	Plant transposon protein	128	190	1.4E-23	IPR006912
SUPERFAMILY	SSF56672	DNA/RNA polymerases	789	1121	1.69E-20	IPR043502
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	533	566	7.33E-7	IPR036875
Gene3D	G3DSA:4.10.60.10	-	538	585	2.4E-5	-
SMART	SM00343	c2hcfinal6	544	560	0.0011	IPR001878
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	545	560	9.603271	IPR001878
MobiDBLite	mobidb-lite	consensus disorder prediction	484	536	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	515	530	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	492	506	-	-
Coils	Coil	Coil	615	635	-	-

Gene Ontology

Molecular Function:

Best hit

Source	Best Hit ID	Description
TAIR	AT4G23160.2	-
RefSeq	XP_023158131.2	uncharacterized protein LOC103653943 isoform X1 [Zea mays]
Swiss-Prot	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
TrEMBL	H2KWX3	Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g03304 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Casuarinaceae	Casuarina glauca	1	Cgl02G1953
Poaceae	Lolium multiflorum	59	gene-QYE76_000611, gene-QYE76_000731, gene-QYE76_000814 ... gene-QYE76_000818, gene-QYE76_001036, gene-QYE76_001587, gene-QYE76_001965, gene-QYE76_002171, gene-QYE76_002498, gene-QYE76_003753, gene-QYE76_004144, gene-QYE76_004452, gene-QYE76_007515, gene-QYE76_009620, gene-QYE76_009808, gene-QYE76_010372, gene-QYE76_011474, gene-QYE76_012386, gene-QYE76_012718, gene-QYE76_016361, gene-QYE76_016591, gene-QYE76_017228, gene-QYE76_022282, gene-QYE76_022694, gene-QYE76_023442, gene-QYE76_023583, gene-QYE76_024608, gene-QYE76_027537, gene-QYE76_028138, gene-QYE76_031171, gene-QYE76_031263, gene-QYE76_031911, gene-QYE76_032503, gene-QYE76_033169, gene-QYE76_033541, gene-QYE76_033861, gene-QYE76_034216, gene-QYE76_035076, gene-QYE76_036366, gene-QYE76_042151, gene-QYE76_043182, gene-QYE76_044293, gene-QYE76_052034, gene-QYE76_053577, gene-QYE76_053942, gene-QYE76_054068, gene-QYE76_055466, gene-QYE76_056540, gene-QYE76_057182, gene-QYE76_057238, gene-QYE76_057398, gene-QYE76_060767, gene-QYE76_060788, gene-QYE76_063325, gene-QYE76_063928, gene-QYE76_065623, gene-QYE76_066085, gene-QYE76_066268, gene-QYE76_066930