Basic Information
Locus ID:
gene-QYE76_031833
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 153440150 | 153440830 | + | gene-QYE76_031833 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.42 | 21,914.01 Da | 61.36 | 89.25 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 114 | 154 | 3.9E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 113 | 161 | 7.54E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 99 | 168 | 9.8E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 114 | 153 | 2.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 114 | 154 | 12.445019 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37150.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051205116.1 | probable E3 ubiquitin-protein ligase ATL44 [Lolium perenne] | 0 |
| Q7XTV7 | Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica OX=39947 GN=HIP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2K2D1A4 | RING-type domain-containing protein OS=Brachypodium distachyon OX=15368 GN=106866307 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30120510 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1093 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1134 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0062s00026.v1.0 |
| Poaceae | Echinochloa crus-galli | 1 | CH01.3664 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031833, gene-QYE76_031838 |