Basic Information
Locus ID:
gene-QYE76_031461
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 138207940 | 138211996 | - | gene-QYE76_031461 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.37 | 41,187.71 Da | 44.14 | 88.30 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.43599E-28 | - |
| Pfam | PF00240 | Ubiquitin family | 4 | 76 | 2.7E-17 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 335 | 371 | 2.4E-11 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 155 | 190 | 9.9E-13 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 255 | 311 | 4.6E-20 | IPR015360 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 251 | 317 | 6.41E-21 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 313 | 384 | 5.34E-15 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 149 | 199 | 4.51E-10 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 88 | 1.54E-21 | IPR029071 |
| Gene3D | G3DSA:1.10.8.10 | - | 145 | 195 | 1.1E-20 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 245 | 311 | 1.6E-23 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 328 | 375 | 2.6E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 77 | 5.2E-24 | - |
| SMART | SM00727 | CBM | 253 | 296 | 1.8E-7 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 4.6E-18 | IPR000626 |
| SMART | SM00165 | uba_6 | 336 | 373 | 4.1E-9 | IPR015940 |
| SMART | SM00165 | uba_6 | 152 | 192 | 9.1E-4 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 378 | 3.5E-107 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 334 | 374 | 14.763827 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.390202 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 150 | 193 | 12.281826 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 330 | 346 | 2.4E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 281 | 303 | 2.4E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 362 | 377 | 2.4E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 347 | 361 | 2.4E-31 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 108 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_051187971.1 | probable ubiquitin receptor RAD23 isoform X2 [Lolium perenne] | 0 |
| Q40742 | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 | 0 | |
| TrEMBL | I1I789 | Ubiquitin receptor RAD23 OS=Brachypodium distachyon OX=15368 GN=100823797 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology