Basic Information
Locus ID:
gene-QYE76_030709
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 108339644 | 108344039 | + | gene-QYE76_030709 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 59,087.49 Da | 47.94 | 85.54 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 353 | 389 | 0.23 | IPR001680 |
| Pfam | PF00635 | MSP (Major sperm protein) domain | 9 | 86 | 1.9E-8 | IPR000535 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 149 | 426 | 1.79E-36 | IPR036322 |
| SUPERFAMILY | SSF49354 | PapD-like | 5 | 88 | 5.49E-11 | IPR008962 |
| Gene3D | G3DSA:2.130.10.10 | - | 160 | 332 | 9.2E-35 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 333 | 430 | 6.3E-15 | IPR015943 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 5 | 135 | 1.7E-15 | IPR013783 |
| SMART | SM00320 | WD40_4 | 250 | 289 | 0.004 | IPR001680 |
| SMART | SM00320 | WD40_4 | 293 | 334 | 0.0018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 350 | 389 | 0.012 | IPR001680 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 8 | 132 | 13.182393 | IPR000535 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 257 | 289 | 10.775796 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 257 | 289 | 9.045603 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52360.3 | - | 0 |
| RefSeq | XP_051202184.1 | putative coatomer subunit beta'-3 [Lolium perenne] | 0 |
| Q54YD8 | Coatomer subunit beta' OS=Dictyostelium discoideum OX=44689 GN=copb2 PE=3 SV=1 | 0 | |
| TrEMBL | M7YYD1 | Coatomer subunit beta'-2 OS=Triticum urartu OX=4572 GN=TRIUR3_13280 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology