halophFGD

Basic Information

Locus ID: gene-QYE76_030158

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: Reverse transcriptase (RNA-dependent DNA polymerase)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	89329443	89338781	+	gene-QYE76_030158

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.54	88,741.18 Da	49.42	77.31	-0.38

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00098	Zinc knuckle	440	455	6.6E-7	IPR001878
Pfam	PF07727	Reverse transcriptase (RNA-dependent DNA polymerase)	585	691	2.4E-34	IPR013103
Pfam	PF14223	gag-polypeptide of LTR copia-type	259	387	2.7E-19	-
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	430	461	4.36E-8	IPR036875
Gene3D	G3DSA:4.10.60.10	-	434	478	9.9E-8	-
SMART	SM00343	c2hcfinal6	439	455	4.3E-5	IPR001878
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	440	455	11.086722	IPR001878
MobiDBLite	mobidb-lite	consensus disorder prediction	393	416	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	34	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	728	753	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	385	416	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G23160.2	-
RefSeq	XP_040245987.1	uncharacterized protein LOC120964960 [Aegilops tauschii subsp. strangulata]
Swiss-Prot	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
TrEMBL	Q7XRW0	OSJNBb0058J09.8 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0058J09.8 PE=4 SV=2

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	1	Sbi_jg49723
Asteraceae	Flaveria trinervia	3	Ftri16G33087, Ftri3G20908, Ftri8G30898
Poaceae	Lolium multiflorum	72	gene-QYE76_001045, gene-QYE76_002921, gene-QYE76_003125 ... gene-QYE76_003340, gene-QYE76_003915, gene-QYE76_003917, gene-QYE76_004923, gene-QYE76_005585, gene-QYE76_006139, gene-QYE76_006605, gene-QYE76_007873, gene-QYE76_008436, gene-QYE76_010084, gene-QYE76_011520, gene-QYE76_011953, gene-QYE76_012207, gene-QYE76_013020, gene-QYE76_013261, gene-QYE76_013644, gene-QYE76_014200, gene-QYE76_015017, gene-QYE76_022095, gene-QYE76_024919, gene-QYE76_025426, gene-QYE76_026897, gene-QYE76_027380, gene-QYE76_030158, gene-QYE76_030810, gene-QYE76_031198, gene-QYE76_031694, gene-QYE76_033544, gene-QYE76_034396, gene-QYE76_036129, gene-QYE76_036893, gene-QYE76_037055, gene-QYE76_037924, gene-QYE76_038468, gene-QYE76_039022, gene-QYE76_039134, gene-QYE76_043377, gene-QYE76_044275, gene-QYE76_048695, gene-QYE76_048902, gene-QYE76_049180, gene-QYE76_049287, gene-QYE76_049337, gene-QYE76_049648, gene-QYE76_050084, gene-QYE76_050146, gene-QYE76_050801, gene-QYE76_053034, gene-QYE76_057171, gene-QYE76_057271, gene-QYE76_057605, gene-QYE76_058294, gene-QYE76_058619, gene-QYE76_059435, gene-QYE76_060735, gene-QYE76_061320, gene-QYE76_061490, gene-QYE76_062413, gene-QYE76_063597, gene-QYE76_064028, gene-QYE76_064528, gene-QYE76_066514, gene-QYE76_066629, gene-QYE76_067159, gene-QYE76_067840, gene-QYE76_069241, gene-QYE76_069442, gene-QYE76_069523, gene-QYE76_069648