Basic Information
Locus ID:
gene-QYE76_030074
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 86267668 | 86272262 | + | gene-QYE76_030074 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 48,910.74 Da | 47.65 | 65.60 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 160 | 234 | 4.75007E-49 | - |
| CDD | cd12354 | RRM3_TIA1_like | 283 | 357 | 2.80881E-31 | - |
| CDD | cd12352 | RRM1_TIA1_like | 76 | 146 | 3.08125E-33 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 285 | 351 | 1.5E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 161 | 231 | 4.8E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 76 | 142 | 3.1E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 271 | 361 | 1.49E-20 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 72 | 239 | 3.14E-42 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 258 | 361 | 3.8E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 158 | 256 | 2.0E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 4 | 157 | 1.9E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 160 | 233 | 1.3E-21 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 284 | 353 | 1.1E-13 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 75 | 144 | 2.0E-15 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 283 | 357 | 15.152756 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 74 | 148 | 15.016313 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 159 | 237 | 16.960629 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| Coils | Coil | Coil | 9 | 29 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_047088645.1 | RNA-binding protein 208 [Lolium rigidum] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6SCT0 | Oligouridylate-binding protein 1B OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology