Basic Information
Locus ID:
gene-QYE76_030047
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 85163388 | 85170263 | - | gene-QYE76_030047 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 119,591.43 Da | 46.47 | 87.48 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 505 | 626 | 1.65329E-24 | - |
| CDD | cd09274 | RNase_HI_RT_Ty3 | 721 | 838 | 2.45783E-56 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 689 | 787 | 3.4E-34 | IPR041577 |
| Pfam | PF03732 | Retrotransposon gag protein | 114 | 204 | 2.0E-8 | IPR005162 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 464 | 821 | 1.22E-101 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 575 | 626 | 7.8E-12 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 456 | 574 | 2.7E-25 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 635 | 729 | 7.0E-28 | IPR043128 |
| Coils | Coil | Coil | 925 | 945 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048538050.1 | uncharacterized protein LOC125516778, partial [Triticum urartu] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A6D2HR23 | Reverse transcriptase OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS2767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |