HalophFGD

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Basic Information
Locus ID: gene-QYE76_029916
Species & Taxonomic ID: Lolium multiflorum & 4521
Genome Assembly: GCA_030979885.1
Description: Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
Chromosome Start End Strand ID
chr7 80416083 80435660 - gene-QYE76_029916
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.73 249,129.78 Da 33.84 72.83 -0.41
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF07727 Reverse transcriptase (RNA-dependent DNA polymerase) 1908 2150 1.6E-75 IPR013103
Pfam PF00098 Zinc knuckle 1284 1300 7.4E-5 IPR001878
Pfam PF00098 Zinc knuckle 748 764 7.4E-5 IPR001878
Pfam PF00098 Zinc knuckle 1766 1782 7.4E-5 IPR001878
Pfam PF14223 gag-polypeptide of LTR copia-type 38 159 1.3E-15 -
Pfam PF14223 gag-polypeptide of LTR copia-type 1598 1719 1.3E-15 -
Pfam PF14223 gag-polypeptide of LTR copia-type 1116 1237 1.3E-15 -
Pfam PF14223 gag-polypeptide of LTR copia-type 580 701 1.3E-15 -
SUPERFAMILY SSF56672 DNA/RNA polymerases 1909 2232 5.78E-23 IPR043502
SUPERFAMILY SSF57756 Retrovirus zinc finger-like domains 738 769 2.44E-7 IPR036875
SUPERFAMILY SSF57756 Retrovirus zinc finger-like domains 1756 1787 2.44E-7 IPR036875
SUPERFAMILY SSF57756 Retrovirus zinc finger-like domains 1274 1305 2.44E-7 IPR036875
Gene3D G3DSA:4.10.60.10 - 715 779 4.2E-5 -
Gene3D G3DSA:4.10.60.10 - 1251 1315 4.2E-5 -
Gene3D G3DSA:4.10.60.10 - 1733 1797 4.2E-5 -
SMART SM00343 c2hcfinal6 206 221 0.42 IPR001878
SMART SM00343 c2hcfinal6 1284 1300 2.1E-4 IPR001878
SMART SM00343 c2hcfinal6 748 764 2.1E-4 IPR001878
SMART SM00343 c2hcfinal6 1766 1782 2.1E-4 IPR001878
ProSiteProfiles PS50158 Zinc finger CCHC-type profile. 1285 1300 9.932926 IPR001878
ProSiteProfiles PS50158 Zinc finger CCHC-type profile. 1767 1782 9.932926 IPR001878
ProSiteProfiles PS50158 Zinc finger CCHC-type profile. 749 764 9.932926 IPR001878
MobiDBLite mobidb-lite consensus disorder prediction 840 858 - -
MobiDBLite mobidb-lite consensus disorder prediction 698 739 - -
MobiDBLite mobidb-lite consensus disorder prediction 1858 1876 - -
MobiDBLite mobidb-lite consensus disorder prediction 711 737 - -
MobiDBLite mobidb-lite consensus disorder prediction 1729 1755 - -
MobiDBLite mobidb-lite consensus disorder prediction 838 870 - -
MobiDBLite mobidb-lite consensus disorder prediction 1856 1888 - -
MobiDBLite mobidb-lite consensus disorder prediction 1247 1273 - -
MobiDBLite mobidb-lite consensus disorder prediction 1374 1406 - -
MobiDBLite mobidb-lite consensus disorder prediction 156 198 - -
MobiDBLite mobidb-lite consensus disorder prediction 1376 1394 - -
MobiDBLite mobidb-lite consensus disorder prediction 1234 1275 - -
MobiDBLite mobidb-lite consensus disorder prediction 1716 1757 - -
MobiDBLite mobidb-lite consensus disorder prediction 297 315 - -
MobiDBLite mobidb-lite consensus disorder prediction 169 195 - -
MobiDBLite mobidb-lite consensus disorder prediction 295 327 - -
Gene Ontology
Molecular Function:
GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G23160.2 - 0
RefSeq XP_023158131.2 uncharacterized protein LOC103653943 isoform X1 [Zea mays] 0
Swiss-Prot P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 0
TrEMBL Q2QV75 Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g13780 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Lolium multiflorum 64 gene-QYE76_002052, gene-QYE76_003543, gene-QYE76_004726 ...
gene-QYE76_006175, gene-QYE76_006719, gene-QYE76_009057, gene-QYE76_010799, gene-QYE76_011556, gene-QYE76_011818, gene-QYE76_012294, gene-QYE76_014773, gene-QYE76_014872, gene-QYE76_015580, gene-QYE76_016249, gene-QYE76_021805, gene-QYE76_021846, gene-QYE76_022185, gene-QYE76_022204, gene-QYE76_027276, gene-QYE76_027565, gene-QYE76_029265, gene-QYE76_029526, gene-QYE76_029916, gene-QYE76_029962, gene-QYE76_030323, gene-QYE76_030324, gene-QYE76_030455, gene-QYE76_031019, gene-QYE76_031708, gene-QYE76_031908, gene-QYE76_032572, gene-QYE76_034782, gene-QYE76_036490, gene-QYE76_036989, gene-QYE76_037826, gene-QYE76_039240, gene-QYE76_039685, gene-QYE76_043780, gene-QYE76_045993, gene-QYE76_046942, gene-QYE76_048980, gene-QYE76_050196, gene-QYE76_051171, gene-QYE76_053874, gene-QYE76_054023, gene-QYE76_054858, gene-QYE76_058568, gene-QYE76_059121, gene-QYE76_059323, gene-QYE76_061610, gene-QYE76_062152, gene-QYE76_063804, gene-QYE76_063805, gene-QYE76_064737, gene-QYE76_064835, gene-QYE76_066506, gene-QYE76_067586, gene-QYE76_068062, gene-QYE76_068188, gene-QYE76_068845, gene-QYE76_069151, gene-QYE76_069485, gene-QYE76_069893, gene-QYE76_071046
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.