Basic Information
Locus ID:
gene-QYE76_029299
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 59942072 | 59947583 | + | gene-QYE76_029299 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.59 | 42,582.25 Da | 55.38 | 86.55 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.80472E-30 | - |
| Pfam | PF00627 | UBA/TS-N domain | 166 | 203 | 6.4E-14 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.0E-17 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 281 | 336 | 1.0E-19 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 365 | 400 | 1.4E-8 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 351 | 406 | 7.89E-13 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 92 | 2.76E-22 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 278 | 342 | 5.89E-20 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 152 | 209 | 1.07E-10 | IPR009060 |
| Gene3D | G3DSA:1.10.10.540 | - | 271 | 337 | 3.5E-24 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 356 | 403 | 9.3E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 2.8E-25 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 158 | 208 | 3.2E-20 | - |
| SMART | SM00165 | uba_6 | 165 | 205 | 3.9E-5 | IPR015940 |
| SMART | SM00165 | uba_6 | 365 | 402 | 1.2E-7 | IPR015940 |
| SMART | SM00727 | CBM | 277 | 322 | 4.4E-7 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 7.5E-19 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 408 | 3.5E-108 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 166 | 206 | 12.546894 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.934587 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 362 | 403 | 14.667439 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 376 | 390 | 3.2E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 307 | 329 | 3.2E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 359 | 375 | 3.2E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 391 | 406 | 3.2E-30 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 250 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_047084907.1 | ubiquitin receptor RAD23d-like [Lolium rigidum] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | F2DUJ6 | Ubiquitin receptor RAD23 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology