Basic Information
Locus ID:
gene-QYE76_029253
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 58594409 | 58603355 | + | gene-QYE76_029253 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 137,718.98 Da | 50.03 | 84.16 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 502 | 576 | 1.75992E-5 | - |
| CDD | cd09274 | RNase_HI_RT_Ty3 | 883 | 1001 | 4.83565E-56 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 202 | 292 | 3.3E-9 | IPR005162 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 852 | 950 | 7.0E-34 | IPR041577 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 762 | 984 | 1.78E-71 | IPR043502 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 483 | 600 | 4.3E-6 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 697 | 795 | 1.6E-7 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 798 | 891 | 1.7E-27 | IPR043128 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 117 | - | - |
| Coils | Coil | Coil | 1088 | 1108 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021750881.1 | uncharacterized protein LOC110716562 [Chenopodium quinoa] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A2N9IKQ4 | RT_RNaseH_2 domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52505 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |