Basic Information
Locus ID:
gene-QYE76_029117
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Chromo (CHRromatin Organisation MOdifier) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 53989750 | 53996447 | + | gene-QYE76_029117 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 96,695.15 Da | 36.27 | 79.95 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 394 | 448 | 1.19475E-23 | - |
| Pfam | PF01426 | BAH domain | 141 | 263 | 1.4E-11 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 395 | 448 | 1.5E-10 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 457 | 818 | 1.4E-33 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 292 | 818 | 3.92E-76 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 368 | 455 | 7.9E-18 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 295 | 837 | 1.1E-248 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 93 | 249 | 1.3E-45 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 610 | 784 | 1.1E-248 | - |
| SMART | SM00439 | BAH_4 | 139 | 264 | 1.3E-18 | IPR001025 |
| SMART | SM00298 | chromo_7 | 394 | 451 | 1.1E-10 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 293 | 825 | 45.837372 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 395 | 449 | 12.973801 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 139 | 264 | 19.293364 | IPR001025 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 463 | 475 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 552 | 565 | 3.1E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 294 | 310 | 3.1E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 506 | 520 | 3.1E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 62 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_047095826.1 | LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase CMT3-like [Lolium rigidum] | 0 |
| C0SQ89 | DNA (cytosine-5)-methyltransferase CMT3 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT3 PE=2 SV=1 | 0 | |
| TrEMBL | B8A9C3 | Cytosine-specific methyltransferase OS=Oryza sativa subsp. indica OX=39946 GN=OsI_02246 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology