Basic Information
Locus ID:
gene-QYE76_029066
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 52310665 | 52317514 | + | gene-QYE76_029066 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 113,435.79 Da | 48.72 | 84.41 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 274 | 371 | 1.43663E-12 | - |
| CDD | cd09274 | RNase_HI_RT_Ty3 | 677 | 795 | 3.54283E-57 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 646 | 744 | 2.4E-34 | IPR041577 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 515 | 778 | 4.67E-85 | IPR043502 |
| SUPERFAMILY | SSF50630 | Acid proteases | 271 | 379 | 3.38E-5 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 478 | 589 | 2.1E-23 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 592 | 685 | 7.2E-28 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 254 | 393 | 2.7E-18 | IPR021109 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 63 | - | - |
| Coils | Coil | Coil | 882 | 902 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048538050.1 | uncharacterized protein LOC125516778, partial [Triticum urartu] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A8B8ZYQ0 | RNA-directed DNA polymerase OS=Phoenix dactylifera OX=42345 GN=LOC113461320 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |