Basic Information
Locus ID:
gene-QYE76_028678
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 40307174 | 40318918 | - | gene-QYE76_028678 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 227,130.25 Da | 45.57 | 78.21 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09076 | L1-EN | 1256 | 1460 | 1.52455E-27 | - |
| CDD | cd09272 | RNase_HI_RT_Ty1 | 1144 | 1279 | 4.12823E-51 | - |
| CDD | cd01650 | RT_nLTR_like | 1736 | 1839 | 2.6532E-33 | - |
| Pfam | PF13976 | GAG-pre-integrase domain | 412 | 483 | 1.7E-15 | IPR025724 |
| Pfam | PF00665 | Integrase core domain | 500 | 597 | 4.4E-9 | IPR001584 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1746 | 1856 | 1.2E-16 | IPR000477 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 806 | 1050 | 5.6E-78 | IPR013103 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 73 | 203 | 3.5E-15 | - |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 244 | 273 | 3.4E-7 | IPR036875 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 806 | 1247 | 1.44E-24 | IPR043502 |
| SUPERFAMILY | SSF56219 | DNase I-like | 1261 | 1461 | 3.08E-12 | IPR036691 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1684 | 1842 | 1.78E-7 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 500 | 635 | 1.8E-25 | IPR012337 |
| Gene3D | G3DSA:4.10.60.10 | - | 220 | 285 | 4.7E-7 | - |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 1223 | 1460 | 1.6E-22 | IPR036691 |
| Gene3D | G3DSA:3.30.420.10 | - | 490 | 636 | 3.3E-24 | IPR036397 |
| SMART | SM00343 | c2hcfinal6 | 253 | 269 | 0.0048 | IPR001878 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 483 | 600 | 12.500262 | IPR001584 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 254 | 269 | 9.059338 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1983 | 1998 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1953 | 1998 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 714 | 756 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 732 | 756 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1953 | 1982 | - | - |
| Coils | Coil | Coil | 1568 | 1588 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_051201501.1 | uncharacterized protein LOC127314998 [Lolium perenne] | 0 |
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8I6XJV0 | Polyprotein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg22385, Sbi_jg25863 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007598, GOSA_00020792 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl20234 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000007376, gene:ENSEOMG00000009922 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0021820, CQ.Regalona.r1.6AG0000030 ... |
| Asteraceae | Flaveria trinervia | 16 | Ftri11G29042, Ftri15G13285, Ftri15G27723, Ftri16G20483 ... |
| Poaceae | Echinochloa crus-galli | 51 | AH01.164, AH01.394, AH02.1450, AH02.1545, AH02.2093, AH05.25 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0332600 |
| Poaceae | Hordeum vulgare | 36 | HORVU.MOREX.r3.1HG0031420.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 14 | gene-QYE76_000087, gene-QYE76_028678, gene-QYE76_030060 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G011730 |
| Poaceae | Paspalum vaginatum | 12 | gene-BS78_01G159000, gene-BS78_01G509100, gene-BS78_K023600 ... |
| Poaceae | Sporobolus alterniflorus | 58 | Chr01G023790, Chr01G030010, Chr01G030020, Chr02G006560 ... |
| Poaceae | Thinopyrum elongatum | 6 | Tel2E01G536000, Tel5E01G418900, Tel5E01G419000 ... |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG060430 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4890 |
| Solanaceae | Lycium barbarum | 88 | gene-LOC132601412, gene-LOC132601432, gene-LOC132601565 ... |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016424 |
| Tamaricaceae | Reaumuria soongarica | 22 | MSTRG.2861_chr02_-, STRG.10221_chr06_+, STRG.10559_chr07_- ... |