Basic Information
Locus ID:
gene-QYE76_028627
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 38548793 | 38559071 | - | gene-QYE76_028627 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 176,435.36 Da | 43.48 | 85.69 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09274 | RNase_HI_RT_Ty3 | 1222 | 1340 | 2.4484E-55 | - |
| CDD | cd00303 | retropepsin_like | 699 | 796 | 1.31749E-12 | - |
| CDD | cd01647 | RT_LTR | 1006 | 1145 | 5.24749E-36 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 400 | 490 | 6.4E-8 | IPR005162 |
| Pfam | PF17917 | RNase H-like domain found in reverse transcriptase | 1216 | 1319 | 3.3E-33 | IPR041373 |
| SUPERFAMILY | SSF50630 | Acid proteases | 695 | 804 | 6.88E-5 | IPR021109 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 965 | 1323 | 2.67E-100 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 1074 | 1151 | 1.0E-22 | IPR043128 |
| Gene3D | G3DSA:3.10.20.370 | - | 1221 | 1290 | 9.3E-10 | - |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 973 | 1073 | 6.1E-19 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 1154 | 1220 | 1.8E-16 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 680 | 820 | 1.0E-17 | IPR021109 |
| Gene3D | G3DSA:3.30.420.10 | - | 1 | 79 | 9.2E-10 | IPR036397 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1525 | 1545 | - | - |
| Coils | Coil | Coil | 1427 | 1447 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021861979.1 | uncharacterized protein LOC110800978 [Spinacia oleracea] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A8T1ZMC0 | Ribonuclease H-like superfamily OS=Arabidopsis thaliana x Arabidopsis arenosa OX=1240361 GN=ISN45_Aa05g009890 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |