Basic Information
Locus ID:
gene-QYE76_028463
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 34120389 | 34123694 | + | gene-QYE76_028463 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 75,785.07 Da | 57.16 | 89.17 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 596 | 637 | 1.74088E-23 | - |
| Pfam | PF04564 | U-box domain | 592 | 663 | 1.4E-19 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 315 | 532 | 8.5E-41 | IPR000719 |
| SUPERFAMILY | SSF57850 | RING/U-box | 583 | 663 | 6.98E-26 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 292 | 571 | 1.24E-63 | IPR011009 |
| SUPERFAMILY | SSF48452 | TPR-like | 4 | 110 | 3.8E-26 | IPR011990 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 284 | 383 | 7.3E-21 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 2 | 111 | 1.1E-23 | IPR011990 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 384 | 589 | 6.9E-47 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 590 | 666 | 5.6E-28 | IPR013083 |
| SMART | SM00220 | serkin_6 | 311 | 576 | 9.3E-22 | IPR000719 |
| SMART | SM00028 | tpr_5 | 5 | 31 | 78.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 32 | 65 | 0.07 | IPR019734 |
| SMART | SM00028 | tpr_5 | 66 | 99 | 39.0 | IPR019734 |
| SMART | SM00504 | Ubox_2 | 595 | 658 | 7.9E-25 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 591 | 665 | 38.878616 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 311 | 571 | 32.145676 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 317 | 338 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 429 | 441 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 211 | - | - |
| Coils | Coil | Coil | 242 | 276 | - | - |
| Coils | Coil | Coil | 196 | 223 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_047075350.1 | U-box domain-containing protein 70-like [Lolium rigidum] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7UZE3 | E3 ubiquitin ligase OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.358, BH06.474, CH06.471 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0510180, gene-QOZ80_6AG0512070 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0654940.1, HORVU.MOREX.r3.7HG0655040.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_028463, gene-QYE76_028467 |
| Poaceae | Oryza coarctata | 2 | Oco11G002860, Oco12G002920 |
| Poaceae | Oryza sativa | 4 | LOC_Os06g06450.1, LOC_Os06g06470.1, LOC_Os06g06490.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G053600 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0100581, Pt_Chr0401511, Pt_Chr0401540, Pt_Chr0402087 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G022250 |
| Poaceae | Thinopyrum elongatum | 5 | Tel6E01G117100, Tel6E01G538000, Tel7E01G244100 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC7AG014340, gene_TRIDC7AG014380 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G122200.2, TraesCS7A02G122600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb257390_P002, Zm00001eb375820_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34785 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31406 |