Basic Information
Locus ID:
gene-QYE76_028390
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 32512959 | 32532038 | + | gene-QYE76_028390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 169,157.47 Da | 48.17 | 89.16 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 527 | 624 | 1.26225E-12 | - |
| CDD | cd09274 | RNase_HI_RT_Ty3 | 1017 | 1135 | 1.7973E-56 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 227 | 317 | 3.3E-9 | IPR005162 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 986 | 1084 | 9.2E-34 | IPR041577 |
| SUPERFAMILY | SSF50630 | Acid proteases | 524 | 632 | 4.88E-5 | IPR021109 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 794 | 1126 | 4.45E-79 | IPR043502 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 508 | 648 | 5.8E-18 | IPR021109 |
| Gene3D | G3DSA:3.10.20.370 | - | 1011 | 1085 | 1.4E-9 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 891 | 944 | 3.4E-12 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 796 | 890 | 1.7E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 118 | - | - |
| Coils | Coil | Coil | 1307 | 1334 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_019098329.1 | PREDICTED: uncharacterized protein LOC109131614, partial [Camelina sativa] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A2G9HYA0 | RNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04802 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |