Basic Information
Locus ID:
gene-QYE76_028233
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Rtf2 RING-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 27897801 | 27898820 | + | gene-QYE76_028233 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.29 | 36,725.87 Da | 51.56 | 81.30 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16653 | RING-like_Rtf2 | 183 | 228 | 1.26108E-20 | IPR027799 |
| Pfam | PF04641 | Rtf2 RING-finger | 78 | 323 | 2.6E-72 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 271 | - | - |
| Coils | Coil | Coil | 236 | 267 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58020.1 | 0 | |
| RefSeq | XP_051205285.1 | uncharacterized protein LOC127319115 [Lolium perenne] | 0 |
| Q3T1J8 | Replication termination factor 2 OS=Rattus norvegicus OX=10116 GN=Rtf2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6TFD7 | Replication termination factor 2 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15576, jg3977 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10557 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018797 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g168240, BVRB_8g192400 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21954, Sbi_jg29600 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15793 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011121 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41825, Sgl46625 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000003248, gene:ENSEOMG00000031956 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0003720, CQ.Regalona.r1.3BG0003850 |
| Apiaceae | Apium graveolens | 1 | Ag10G01913 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G005270 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710414, gene-LOC103714229 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1843.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G30969 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G58020.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013961m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g19700.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g037400.2N, BniB05g037610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2537 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g06330 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0002s00049.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g09420 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.254 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000876 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G27204, Lb5G27207 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.558, BH06.611, CH06.626 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0511360, gene-QOZ80_6BG0463350 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0658950.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_028189, gene-QYE76_028233 |
| Poaceae | Oryza coarctata | 2 | Oco11G003870, Oco12G003860 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g08490.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G065900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G021460 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G300100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG018060 |
| Poaceae | Triticum aestivum | 3 | TraesCS7B02G050900.1.cds1, TraesCS7B02G355600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb158280_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4995 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29236 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.2433, evm.TU.LG18.339, evm.TU.LG26.702 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g12650 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.2192 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25288 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13188 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4945 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.475 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000210 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17480 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9199 |
| Salicaceae | Populus euphratica | 2 | populus_peu05611, populus_peu12248 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602990 |
| Solanaceae | Solanum chilense | 1 | SOLCI001358200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025857 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8158 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1651 |
| Zosteraceae | Zostera marina | 1 | Zosma03g06330.v3.1 |