Basic Information
Locus ID:
gene-QYE76_027939
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 19273988 | 19277205 | - | gene-QYE76_027939 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 23,798.14 Da | 36.21 | 88.84 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 18 | 89 | 2.4E-15 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 13 | 89 | 1.92E-18 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 10 | 101 | 8.6E-20 | - |
| SMART | SM00213 | ubq_7 | 16 | 88 | 6.0E-17 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 16 | 92 | 19.085346 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 69 | 90 | 3.0E-6 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 26 | 46 | 3.0E-6 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 175 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09790.1 | ubiquitin 8. encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions. | 0 |
| RefSeq | XP_051202577.1 | ubiquitin-like [Lolium perenne] | 0 |
| P0CH27 | Ubiquitin-ribosomal protein eL40 fusion protein OS=Trypanosoma cruzi OX=5693 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2V2UKP1 | Putative polyubiquitin OS=Trypanosoma cruzi OX=5693 GN=C4B63_292g22 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1670.V1.1 |
| Poaceae | Lolium multiflorum | 8 | gene-QYE76_009150, gene-QYE76_013113, gene-QYE76_014034 ... |