Basic Information
Locus ID:
gene-QYE76_027792
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 15617616 | 15618272 | - | gene-QYE76_027792 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 24,146.44 Da | 87.83 | 65.05 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 136 | 177 | 3.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 136 | 184 | 2.65E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 191 | 1.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 137 | 176 | 4.8E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 137 | 177 | 12.740079 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 27 | - | - |
| Coils | Coil | Coil | 31 | 66 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 0 |
| RefSeq | XP_051197738.1 | NAD-dependent protein deacetylase HST1-like [Lolium perenne] | 0 |
| Q4V7B8 | RING finger protein 44 OS=Rattus norvegicus OX=10116 GN=Rnf44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A341ZDA8 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg55313 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14352 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1AG0021820 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10009637m.g.v1.0 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0033s00012.v1.0 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_016725, gene-QYE76_027791, gene-QYE76_027792 ... |
| Poaceae | Oryza coarctata | 1 | Oco12G002140 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g05200.1 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402251 |
| Poaceae | Thinopyrum elongatum | 5 | Tel3E01G225000, Tel3E01G226000, Tel3E01G226400 ... |
| Poaceae | Triticum aestivum | 15 | TraesCS3A02G309200.1.cds1, TraesCS3A02G309300.1.cds1 ... |