Basic Information
Locus ID:
gene-QYE76_027380
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 3678307 | 3689507 | - | gene-QYE76_027380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.38 | 131,725.16 Da | 52.08 | 59.22 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14416 | PMR5 N terminal Domain | 479 | 530 | 1.1E-20 | IPR025846 |
| Pfam | PF13839 | GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | 532 | 579 | 8.1E-18 | IPR026057 |
| Pfam | PF00098 | Zinc knuckle | 818 | 833 | 1.1E-6 | IPR001878 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 807 | 841 | 5.06E-8 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 810 | 843 | 6.4E-7 | - |
| SMART | SM00343 | c2hcfinal6 | 817 | 833 | 1.2E-4 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 818 | 833 | 11.053757 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1166 | 1203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 771 | 794 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 958 | 976 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 949 | 976 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 765 | 794 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 415 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60790.1 | Plant protein of unknown function (DUF828). Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). | 0 |
| RefSeq | XP_047064033.1 | protein trichome birefringence-like 1 [Lolium rigidum] | 0 |
| Q8VYR3 | Protein trichome birefringence-like 2 OS=Arabidopsis thaliana OX=3702 GN=TBL2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8I7BDP6 | PMR5N domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg49723 |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G33087, Ftri3G20908, Ftri8G30898 |
| Poaceae | Lolium multiflorum | 72 | gene-QYE76_001045, gene-QYE76_002921, gene-QYE76_003125 ... |