Basic Information
Locus ID:
gene-QYE76_026661
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 249731280 | 249741459 | + | gene-QYE76_026661 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 99,906.82 Da | 36.18 | 87.25 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 29 | 264 | 1.1E-42 | IPR000719 |
| Pfam | PF00635 | MSP (Major sperm protein) domain | 299 | 375 | 1.1E-7 | IPR000535 |
| Pfam | PF00400 | WD domain, G-beta repeat | 441 | 468 | 0.039 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 683 | 720 | 0.036 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 643 | 678 | 1.4E-4 | IPR001680 |
| SUPERFAMILY | SSF49354 | PapD-like | 295 | 424 | 9.94E-13 | IPR008962 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 24 | 274 | 3.28E-60 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 441 | 754 | 2.65E-46 | IPR036322 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 293 | 425 | 1.0E-15 | IPR013783 |
| Gene3D | G3DSA:2.130.10.10 | - | 485 | 763 | 1.8E-58 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 23 | 292 | 6.7E-65 | - |
| SMART | SM00320 | WD40_4 | 637 | 678 | 2.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 430 | 468 | 53.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 508 | 547 | 0.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 596 | 634 | 78.0 | IPR001680 |
| SMART | SM00220 | serkin_6 | 17 | 271 | 3.6E-21 | IPR000719 |
| SMART | SM00320 | WD40_4 | 550 | 592 | 0.49 | IPR001680 |
| SMART | SM00320 | WD40_4 | 681 | 720 | 2.2E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 644 | 687 | 11.711506 | IPR001680 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 298 | 423 | 9.860189 | IPR000535 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 644 | 680 | 8.887423 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 278 | 32.555561 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 139 | 151 | - | IPR008271 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 665 | 679 | - | IPR019775 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11410.2 | - | 0 |
| RefSeq | XP_051191771.1 | uncharacterized protein LOC127305396 isoform X3 [Lolium perenne] | 0 |
| O49564 | Cysteine-rich receptor-like protein kinase 27 OS=Arabidopsis thaliana OX=3702 GN=CRK27 PE=3 SV=2 | 0 | |
| TrEMBL | A0A453TAA5 | Protein kinase domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology