Basic Information
Locus ID:
gene-QYE76_026534
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Reverse transcriptase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 246595503 | 246598564 | - | gene-QYE76_026534 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 109,959.35 Da | 42.30 | 77.35 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 726 | 904 | 2.65608E-70 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 743 | 902 | 1.3E-19 | IPR000477 |
| Pfam | PF03732 | Retrotransposon gag protein | 310 | 401 | 2.2E-15 | IPR005162 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 686 | 974 | 4.11E-89 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 916 | 976 | 5.8E-11 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 687 | 829 | 4.4E-62 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 767 | 904 | 4.4E-62 | IPR043128 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 597 | 624 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 597 | 621 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_024172049.1 | uncharacterized protein K02A2.6-like [Rosa chinensis] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A2T7AA45 | Integrase catalytic domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_J003800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |