Basic Information
Locus ID:
gene-QYE76_026354
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 242579441 | 242599412 | - | gene-QYE76_026354 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 138,846.19 Da | 37.71 | 84.63 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00635 | MSP (Major sperm protein) domain | 319 | 401 | 1.6E-7 | IPR000535 |
| Pfam | PF00069 | Protein kinase domain | 38 | 293 | 1.1E-48 | IPR000719 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1137 | 1174 | 0.021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1096 | 1132 | 5.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 626 | 661 | 2.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 461 | 488 | 0.057 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 666 | 703 | 0.052 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 21 | 303 | 1.35E-69 | IPR011009 |
| SUPERFAMILY | SSF49354 | PapD-like | 308 | 444 | 3.14E-13 | IPR008962 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 461 | 1174 | 1.39E-49 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 837 | 1056 | 5.13E-10 | IPR036322 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 3 | 106 | 3.5E-23 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 915 | 1194 | 2.2E-50 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 459 | 746 | 1.5E-67 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 128 | 315 | 1.9E-49 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 316 | 445 | 1.2E-15 | IPR013783 |
| SMART | SM00220 | serkin_6 | 37 | 300 | 3.0E-38 | IPR000719 |
| SMART | SM00320 | WD40_4 | 579 | 617 | 78.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 533 | 575 | 0.49 | IPR001680 |
| SMART | SM00320 | WD40_4 | 491 | 530 | 0.036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 664 | 703 | 2.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1047 | 1088 | 240.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 620 | 661 | 2.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1091 | 1132 | 6.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 906 | 949 | 96.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 450 | 488 | 53.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1135 | 1174 | 0.0024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 954 | 991 | 7.0 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 37 | 307 | 37.403522 | IPR000719 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 318 | 443 | 10.078755 | IPR000535 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 627 | 663 | 8.887423 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1098 | 1141 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 627 | 670 | 11.711506 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1098 | 1134 | 10.390142 | - |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 43 | 65 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 168 | 180 | - | IPR008271 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 1119 | 1133 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 648 | 662 | - | IPR019775 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11410.2 | - | 0 |
| RefSeq | XP_051191770.1 | uncharacterized protein LOC127305396 isoform X2 [Lolium perenne] | 0 |
| Q9LPZ3 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 OS=Arabidopsis thaliana OX=3702 GN=At1g11410 PE=3 SV=3 | 0 | |
| TrEMBL | A0A8R7VCS2 | Coatomer subunit beta'-2 OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology