Basic Information
Locus ID:
gene-QYE76_026339
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Phloem protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 242260501 | 242267627 | + | gene-QYE76_026339 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 68,365.43 Da | 49.64 | 77.93 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 251 | 292 | 0.0018 | IPR001810 |
| Pfam | PF12937 | F-box-like | 349 | 389 | 8.5E-7 | IPR001810 |
| Pfam | PF00646 | F-box domain | 9 | 50 | 0.0051 | IPR001810 |
| Pfam | PF14299 | Phloem protein 2 | 165 | 230 | 5.7E-8 | IPR025886 |
| SUPERFAMILY | SSF81383 | F-box domain | 236 | 325 | 7.59E-14 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 338 | 395 | 1.96E-11 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 103 | 1.2E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 50 | 4.2E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 342 | 390 | 3.7E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 241 | 292 | 1.1E-6 | - |
| SMART | SM00256 | fbox_2 | 12 | 52 | 0.044 | IPR001810 |
| SMART | SM00256 | fbox_2 | 254 | 294 | 0.016 | IPR001810 |
| SMART | SM00256 | fbox_2 | 351 | 391 | 0.023 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 6 | 52 | 9.709425 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 345 | 391 | 10.080346 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 248 | 294 | 9.153042 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 532 | 549 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80110.1 | phloem protein 2-B11. | 0 |
| RefSeq | XP_051211470.1 | uncharacterized protein LOC127328952 [Lolium perenne] | 0 |
| Q949S5 | F-box protein PP2-B11 OS=Arabidopsis thaliana OX=3702 GN=PP2B11 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6QMX5 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_026339, gene-QYE76_026688 |