Basic Information
Locus ID:
gene-QYE76_026028
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 232211665 | 232216384 | + | gene-QYE76_026028 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.03 | 92,918.27 Da | 60.27 | 53.12 | -1.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 365 | 393 | 3.2E-9 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 358 | 394 | 2.16E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 396 | 427 | 5.6E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 357 | 395 | 6.0E-17 | - |
| SMART | SM00547 | zf_4 | 367 | 391 | 2.1E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 400 | 424 | 4.4E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 398 | 427 | 9.303284 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 365 | 394 | 10.116323 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 369 | 388 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 402 | 421 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 648 | 681 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 482 | 499 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 588 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 480 | 823 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 712 | 730 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 609 | 641 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 737 | 759 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 533 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 760 | 792 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 682 | 711 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 800 | 823 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_051191477.1 | uncharacterized protein LOC127305139 [Lolium perenne] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6NU10 | Zinc finger protein VAR3, chloroplastic OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology