Basic Information
Locus ID:
gene-QYE76_024985
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 199685307 | 199686328 | + | gene-QYE76_024985 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 29,678.71 Da | 55.98 | 82.05 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 142 | 270 | 1.62659E-33 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 140 | 270 | 4.5E-18 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 118 | 269 | 1.96E-31 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 115 | 271 | 6.9E-37 | IPR036404 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 114 | 1.9E-7 | IPR013083 |
| SMART | SM00915 | Jacalin_2 | 136 | 271 | 4.2E-6 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 120 | 271 | 29.992622 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37910.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_047079953.1 | jacalin-related lectin 3-like [Lolium rigidum] | 0 |
| Q9FKD5 | Putative E3 ubiquitin-protein ligase SINA-like 9 OS=Arabidopsis thaliana OX=3702 GN=At5g37910 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6FK34 | Jacalin-type lectin domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology