Basic Information
Locus ID:
gene-QYE76_024503
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
gag-polypeptide of LTR copia-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 181096073 | 181097662 | - | gene-QYE76_024503 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 53,883.49 Da | 65.74 | 80.96 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14244 | gag-polypeptide of LTR copia-type | 245 | 282 | 1.7E-5 | IPR029472 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 292 | 424 | 4.9E-16 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 34 | 46 | 7.9E-10 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 14 | 30 | 7.9E-10 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 197 | 222 | 7.9E-10 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 111 | 128 | 7.9E-10 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 94 | 110 | 7.9E-10 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 31 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051220390.1 | uncharacterized protein LOC127338219 [Lolium perenne] | 0 |
| TrEMBL | A0A453NWQ9 | gag_pre-integrs domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 7 | gene-QYE76_021354, gene-QYE76_024503, gene-QYE76_029637 ... |