Basic Information
Locus ID:
gene-QYE76_024346
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 175338019 | 175345023 | - | gene-QYE76_024346 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.89 | 46,570.04 Da | 30.35 | 71.47 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 146 | 426 | 1.28297E-41 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 142 | 178 | 4.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 304 | 338 | 0.0084 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 269 | 299 | 0.016 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 139 | 427 | 2.69E-48 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 112 | 144 | 3.01E-5 | IPR036855 |
| Gene3D | G3DSA:2.130.10.10 | - | 283 | 433 | 6.4E-26 | IPR015943 |
| Gene3D | G3DSA:2.30.30.1190 | - | 102 | 139 | 3.4E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 140 | 282 | 3.1E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 181 | 216 | 190.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 26 | 50 | 0.39 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 109 | 134 | 0.0052 | IPR000571 |
| SMART | SM00320 | WD40_4 | 389 | 426 | 43.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 262 | 299 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 139 | 178 | 8.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 302 | 339 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 343 | 386 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 218 | 255 | 4.9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 146 | 178 | 11.497408 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 107 | 135 | 13.290835 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 269 | 302 | 8.887423 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 25 | 51 | 10.42716 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 146 | 187 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 269 | 308 | 11.64467 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 286 | 300 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 286 | 300 | 8.6E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 326 | 340 | 8.6E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 165 | 179 | 8.6E-8 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_047081749.1 | zinc finger CCCH domain-containing protein 17-like [Lolium rigidum] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6QJA1 | Zinc finger CCCH domain-containing protein 48-like OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology