Basic Information
Locus ID:
gene-QYE76_024107
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 165907596 | 165913752 | + | gene-QYE76_024107 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 110,396.83 Da | 47.19 | 83.84 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 414 | 511 | 1.38576E-12 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 114 | 204 | 2.4E-9 | IPR005162 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 681 | 793 | 4.23E-24 | IPR043502 |
| SUPERFAMILY | SSF50630 | Acid proteases | 411 | 519 | 3.21E-5 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 395 | 533 | 2.7E-18 | IPR021109 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 672 | 803 | 2.9E-29 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 52 | - | - |
| Coils | Coil | Coil | 848 | 868 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039687849.1 | uncharacterized protein LOC120579509 [Medicago truncatula] | 0 |
| TrEMBL | A0A2Z6PWT2 | Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium subterraneum OX=3900 GN=TSUD_418330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |