Basic Information
Locus ID:
gene-QYE76_024068
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 164626927 | 164627757 | + | gene-QYE76_024068 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 30,335.31 Da | 63.62 | 83.12 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 98 | 141 | 8.39323E-16 | - |
| Pfam | PF13639 | Ring finger domain | 98 | 141 | 6.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 92 | 147 | 1.77E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 148 | 2.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 99 | 140 | 1.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 99 | 141 | 12.592549 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 276 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 0 |
| RefSeq | XP_047043722.1 | E3 ubiquitin-protein ligase ATL31-like [Lolium rigidum] | 0 |
| Q8RXX9 | E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6E9X1 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH07.2289, AH09.1175, BH06.2110, BH09.1276, CH07.2181 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0315720, gene-QOZ80_4BG0346710 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0172140.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_013370, gene-QYE76_024068, gene-QYE76_044350 |
| Poaceae | Oryza coarctata | 4 | Oco03G013260, Oco04G013140, Oco07G007180, Oco08G007090 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g36300.1, LOC_Os04g37730.1, LOC_Os12g10450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G115100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302550, Pt_Chr0504746 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G011920, Chr25G007850, Chr26G007610 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G559300 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG046230, gene_TRIDC2BG049170 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G318200.1.cds1, TraesCS2B02G336300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb081330_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18749, nbis-gene-27038, nbis-gene-37715 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19798 |