Basic Information
Locus ID:
gene-QYE76_023920
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Double-stranded RNA binding motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 158487626 | 158497011 | + | gene-QYE76_023920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 103,738.07 Da | 56.10 | 75.54 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 254 | 364 | 2.8E-7 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 695 | 755 | 1.1E-6 | IPR014720 |
| SUPERFAMILY | SSF56784 | HAD-like | 132 | 388 | 8.03E-21 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 693 | 757 | 2.32E-10 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 819 | 894 | 3.97E-13 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 814 | 893 | 2.4E-6 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 695 | 774 | 2.7E-8 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 132 | 392 | 3.2E-25 | IPR023214 |
| SMART | SM00577 | forpap2 | 199 | 373 | 5.9E-14 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 818 | 884 | 0.067 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 692 | 756 | 2.7E-7 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 817 | 885 | 10.508802 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 691 | 757 | 12.645117 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 138 | 389 | 16.204063 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 894 | 933 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_051193612.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X2 [Lolium perenne] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7USQ1 | protein-serine/threonine phosphatase OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology