Basic Information
Locus ID:
gene-QYE76_023406
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 139282101 | 139285175 | + | gene-QYE76_023406 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 84,220.65 Da | 57.44 | 74.74 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 327 | 420 | 1.24415E-17 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 615 | 713 | 2.0E-21 | IPR041577 |
| Pfam | PF13975 | gag-polyprotein putative aspartyl protease | 329 | 419 | 4.2E-10 | - |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 543 | 719 | 2.76E-30 | IPR043502 |
| SUPERFAMILY | SSF50630 | Acid proteases | 325 | 425 | 4.42E-16 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 569 | 643 | 1.2E-9 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 311 | 449 | 5.1E-20 | IPR021109 |
| ProSiteProfiles | PS50175 | Aspartyl protease, retroviral-type family profile. | 337 | 418 | 8.660387 | IPR001995 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 339 | 350 | - | IPR001969 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 212 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_050215076.1 | uncharacterized protein LOC126666145 [Mercurialis annua] | 0 |
| TrEMBL | A0A2T8HZN5 | Peptidase A2 domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_9G001000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |