Basic Information
Locus ID:
gene-QYE76_023326
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 136698514 | 136705113 | - | gene-QYE76_023326 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 136,758.67 Da | 56.68 | 70.88 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 324 | 417 | 9.41019E-19 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 1107 | 1198 | 1.2E-15 | IPR005162 |
| Pfam | PF13975 | gag-polyprotein putative aspartyl protease | 325 | 416 | 9.2E-10 | - |
| SUPERFAMILY | SSF50630 | Acid proteases | 322 | 422 | 7.24E-16 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 309 | 445 | 8.7E-20 | IPR021109 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 336 | 347 | - | IPR001969 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 637 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 573 | 591 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 654 | 680 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 567 | 637 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051191609.1 | uncharacterized protein LOC127305246 [Lolium perenne] | 0 |
| TrEMBL | A0A2T8HZN5 | Peptidase A2 domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_9G001000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |