Basic Information
Locus ID:
gene-QYE76_022959
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 125443738 | 125444739 | + | gene-QYE76_022959 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.65 | 34,989.78 Da | 79.62 | 65.77 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 124 | 160 | 2.77678E-14 | - |
| Pfam | PF12678 | RING-H2 zinc finger domain | 133 | 160 | 5.3E-8 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 124 | 166 | 7.95E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 164 | 9.8E-13 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 283 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 0 |
| RefSeq | XP_051212562.1 | E3 ubiquitin-protein ligase ATL6-like [Lolium perenne] | 0 |
| Q8RXX9 | E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2 | 0 | |
| TrEMBL | A0A453M2N8 | RING-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH07.2290, BH06.2109, CH07.2182 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0134800, gene-QOZ80_2BG0190410 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0314400.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_022959, gene-QYE76_023123 |
| Poaceae | Oryza coarctata | 1 | Oco04G013130 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g36320.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G171100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G009350, Chr09G013690, Chr13G009540, Chr15G010870 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G726900, Tel5E01G688100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG064960, gene_TRIDC3BG073300 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS3A02G459700.1, TraesCS3B02G499500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb244640_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20683 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13737 |