Basic Information
Locus ID:
gene-QYE76_022792
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 118452075 | 118453361 | - | gene-QYE76_022792 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 46,818.75 Da | 50.42 | 98.72 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 13 | 56 | 4.85842E-23 | - |
| Pfam | PF04564 | U-box domain | 9 | 84 | 6.3E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 206 | 407 | 1.48E-18 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 89 | 3.63E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 88 | 3.7E-28 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 97 | 406 | 7.1E-17 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 12 | 79 | 4.5E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 8 | 86 | 34.270008 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_051217028.1 | E3 ubiquitin-protein ligase PUB23-like isoform X1 [Lolium perenne] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6PUL5 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology