Basic Information
Locus ID:
gene-QYE76_022548
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 109568946 | 109581361 | + | gene-QYE76_022548 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 96,265.70 Da | 46.80 | 96.03 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 710 | 803 | 8.6876E-16 | - |
| Pfam | PF00646 | F-box domain | 198 | 242 | 1.6E-8 | IPR001810 |
| Pfam | PF00646 | F-box domain | 149 | 191 | 2.0E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 195 | 238 | 2.75E-10 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 135 | 190 | 9.42E-12 | IPR036047 |
| SUPERFAMILY | SSF50630 | Acid proteases | 707 | 811 | 1.65E-7 | IPR021109 |
| SUPERFAMILY | SSF52047 | RNI-like | 286 | 407 | 2.51E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 198 | 240 | 5.3E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 149 | 189 | 3.3E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 270 | 465 | 2.9E-6 | IPR032675 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 688 | 824 | 5.8E-24 | IPR021109 |
| SMART | SM00256 | fbox_2 | 153 | 192 | 0.003 | IPR001810 |
| SMART | SM00256 | fbox_2 | 202 | 242 | 6.4E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 147 | 202 | 9.338503 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 196 | 232 | 10.080346 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 145 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02910.2 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_045089081.1 | uncharacterized protein LOC123497118 [Aegilops tauschii subsp. strangulata] | 0 |
| Q9LYZ4 | F-box/LRR-repeat protein At5g02910 OS=Arabidopsis thaliana OX=3702 GN=At5g02910 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7H4LI99 | Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS2948 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 35 | gene-QYE76_002238, gene-QYE76_002580, gene-QYE76_006006 ... |