Basic Information
Locus ID:
gene-QYE76_022498
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Vacuolar protein sorting-associated protein 62
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 106535711 | 106588101 | - | gene-QYE76_022498 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 408,473.22 Da | 45.44 | 87.41 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2733 | 2837 | 9.22069E-8 | - |
| Pfam | PF00168 | C2 domain | 2734 | 2839 | 5.1E-6 | IPR000008 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3360 | 3622 | 1.2E-9 | IPR009543 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2093 | 2258 | 1.3E-13 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2394 | 2464 | 6.5E-8 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 255 | 495 | 1.7E-63 | IPR031646 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 117 | 230 | 1.0E-30 | IPR026854 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 690 | 907 | 1.2E-30 | IPR031642 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2729 | 2838 | 4.58E-7 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2706 | 2858 | 5.5E-8 | IPR035892 |
| SMART | SM00694 | dysfc | 3069 | 3107 | 5.2E-4 | IPR006614 |
| SMART | SM00239 | C2_3c | 2732 | 2853 | 0.0077 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2712 | 2851 | 9.82515 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_047081571.1 | uncharacterized protein LOC124692276 [Lolium rigidum] | 0 |
| A1Z713 | Intermembrane lipid transfer protein Vps13 OS=Drosophila melanogaster OX=7227 GN=Vps13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0Q3FJP1 | C2 domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100837501 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology