Basic Information
Locus ID:
gene-QYE76_022268
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Short Name:
UBP15
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 97381956 | 97388574 | - | gene-QYE76_022268 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.97 | 108,298.54 Da | 56.23 | 66.30 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 440 | 745 | 5.15565E-162 | - |
| Pfam | PF01753 | MYND finger | 88 | 125 | 3.5E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 442 | 744 | 4.7E-42 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 439 | 747 | 1.0E-85 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 83 | 128 | 6.63E-11 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 78 | 130 | 2.1E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 436 | 751 | 1.1E-88 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 88 | 125 | 11.784152 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 441 | 747 | 50.431767 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 442 | 457 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 765 | 789 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17110.1 | ubiquitin-specific protease 15. Encodes a ubiquitin-specific protease, and its activity has been confirmed in an in vitro assay. ubp15 mutants have defects in cell proliferation, and the associated processes of leaf, root, stem, flower, and silique development. UBP15 can be found in the nucleus and cytoplasm in transient assays. Though UBP15 is expressed in many tissues, UBP15 transcript levels are higher in rosette leaves and inflorescences than in other parts of the plant. | 0 |
| RefSeq | XP_051194184.1 | ubiquitin C-terminal hydrolase 15 isoform X3 [Lolium perenne] | 0 |
| Q0E2F9 | Ubiquitin C-terminal hydrolase 15 OS=Oryza sativa subsp. japonica OX=39947 GN=UBP15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453NV33 | Ubiquitin carboxyl-terminal hydrolase 15 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology