Basic Information
Locus ID:
gene-QYE76_022048
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 87371849 | 87372379 | - | gene-QYE76_022048 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 18,279.97 Da | 53.74 | 73.30 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 101 | 144 | 6.18024E-17 | - |
| Pfam | PF13639 | Ring finger domain | 101 | 144 | 1.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 94 | 152 | 3.53E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 66 | 148 | 8.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 102 | 143 | 4.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 102 | 144 | 11.825393 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 176 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42350.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_047079426.1 | RING-H2 finger protein ATL74-like [Lolium rigidum] | 0 |
| Q9SLC4 | RING-H2 finger protein ATL40 OS=Arabidopsis thaliana OX=3702 GN=ATL40 PE=2 SV=1 | 0 | |
| TrEMBL | F2DP69 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH07.1033, BH07.1155, CH02.245, CH02.272, CH07.931 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0107880, gene-QOZ80_2BG0161510 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0198510.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 8 | gene-QYE76_022048, gene-QYE76_022049, gene-QYE76_022058 ... |
| Poaceae | Oryza coarctata | 2 | Oco03G006810, Oco04G007100 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g11480.1, LOC_Os02g15120.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G019900, gene-BS78_04G104800 |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G802700, Tel3E01G248100, Tel4E01G155100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG067220, gene_TRIDC2BG072390 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2A02G475800.1.cds1, TraesCS2B02G499500.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb204420_P001, Zm00001eb238390_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34198, nbis-gene-50891 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12523, Zma_g15399 |