Basic Information
Locus ID:
gene-QYE76_021898
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 82261943 | 82266650 | + | gene-QYE76_021898 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 66,910.00 Da | 45.91 | 71.82 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 418 | 511 | 9.90039E-19 | - |
| Pfam | PF13975 | gag-polyprotein putative aspartyl protease | 419 | 510 | 3.6E-10 | - |
| Pfam | PF04827 | Plant transposon protein | 172 | 220 | 1.1E-16 | IPR006912 |
| SUPERFAMILY | SSF50630 | Acid proteases | 416 | 516 | 5.28E-17 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 402 | 540 | 1.5E-20 | IPR021109 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 430 | 441 | - | IPR001969 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G13770.1 | 0 | |
| RefSeq | XP_051229127.1 | uncharacterized protein LOC127346926 [Lolium perenne] | 0 |
| TrEMBL | A0A2T8I8I1 | Peptidase A2 domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_8G111800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |