halophFGD

Basic Information

Locus ID: gene-QYE76_021805

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: gag-polypeptide of LTR copia-type

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	78336744	78346089	-	gene-QYE76_021805

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.36	137,345.47 Da	45.05	76.40	-0.13

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14223	gag-polypeptide of LTR copia-type	927	1061	7.6E-20	-
Pfam	PF13976	GAG-pre-integrase domain	376	442	9.3E-16	IPR025724
Pfam	PF14223	gag-polypeptide of LTR copia-type	71	193	4.4E-16	-
Pfam	PF00098	Zinc knuckle	240	256	4.0E-5	IPR001878
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	230	261	1.33E-7	IPR036875
SMART	SM00343	c2hcfinal6	240	256	2.1E-4	IPR001878
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	241	256	9.932926	IPR001878
MobiDBLite	mobidb-lite	consensus disorder prediction	1080	1112	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	535	567	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	203	229	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	190	231	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1088	1112	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	537	555	-	-

Gene Ontology

Molecular Function:

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_051211696.1	uncharacterized protein LOC127329200 [Lolium perenne]	0
TrEMBL	Q5TKC1	Putative polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=P0040B10.12 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Lolium multiflorum	64	gene-QYE76_002052, gene-QYE76_003543, gene-QYE76_004726 ... gene-QYE76_006175, gene-QYE76_006719, gene-QYE76_009057, gene-QYE76_010799, gene-QYE76_011556, gene-QYE76_011818, gene-QYE76_012294, gene-QYE76_014773, gene-QYE76_014872, gene-QYE76_015580, gene-QYE76_016249, gene-QYE76_021805, gene-QYE76_021846, gene-QYE76_022185, gene-QYE76_022204, gene-QYE76_027276, gene-QYE76_027565, gene-QYE76_029265, gene-QYE76_029526, gene-QYE76_029916, gene-QYE76_029962, gene-QYE76_030323, gene-QYE76_030324, gene-QYE76_030455, gene-QYE76_031019, gene-QYE76_031708, gene-QYE76_031908, gene-QYE76_032572, gene-QYE76_034782, gene-QYE76_036490, gene-QYE76_036989, gene-QYE76_037826, gene-QYE76_039240, gene-QYE76_039685, gene-QYE76_043780, gene-QYE76_045993, gene-QYE76_046942, gene-QYE76_048980, gene-QYE76_050196, gene-QYE76_051171, gene-QYE76_053874, gene-QYE76_054023, gene-QYE76_054858, gene-QYE76_058568, gene-QYE76_059121, gene-QYE76_059323, gene-QYE76_061610, gene-QYE76_062152, gene-QYE76_063804, gene-QYE76_063805, gene-QYE76_064737, gene-QYE76_064835, gene-QYE76_066506, gene-QYE76_067586, gene-QYE76_068062, gene-QYE76_068188, gene-QYE76_068845, gene-QYE76_069151, gene-QYE76_069485, gene-QYE76_069893, gene-QYE76_071046