Basic Information
Locus ID:
gene-QYE76_021651
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 72847342 | 72851362 | + | gene-QYE76_021651 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.83 | 79,752.06 Da | 51.45 | 85.59 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 1 | 221 | 3.92652E-39 | - |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 351 | 435 | 4.0E-23 | IPR026960 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 4 | 219 | 5.4E-30 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 7 | 192 | 8.9E-11 | IPR043502 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 1 | 221 | 15.230308 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 629 | 643 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 625 | 714 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 646 | 675 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051211831.1 | uncharacterized protein LOC127329343 [Lolium perenne] | 0 |
| TrEMBL | Q7G7C4 | Putative reverse transcriptase OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0060I05.8 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 16 | gene-QYE76_005466, gene-QYE76_005873, gene-QYE76_007046 ... |