Basic Information
Locus ID:
gene-QYE76_021567
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 70117994 | 70124868 | + | gene-QYE76_021567 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 113,834.46 Da | 48.80 | 83.34 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 417 | 514 | 1.43812E-12 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 117 | 207 | 2.5E-9 | IPR005162 |
| SUPERFAMILY | SSF50630 | Acid proteases | 414 | 522 | 3.38E-5 | IPR021109 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 684 | 799 | 1.78E-24 | IPR043502 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 398 | 536 | 2.8E-18 | IPR021109 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 675 | 810 | 1.1E-28 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 64 | - | - |
| Coils | Coil | Coil | 883 | 903 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039687849.1 | uncharacterized protein LOC120579509 [Medicago truncatula] | 0 |
| TrEMBL | A0A2Z6PWT2 | Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium subterraneum OX=3900 GN=TSUD_418330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |