Basic Information
Locus ID:
gene-QYE76_021394
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 64261402 | 64265217 | - | gene-QYE76_021394 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.15 | 92,978.73 Da | 48.69 | 74.03 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 593 | 836 | 4.9E-67 | IPR013103 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 112 | 249 | 1.8E-14 | - |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 593 | 816 | 5.78E-22 | IPR043502 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 834 | 853 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 313 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_021319258.1 | uncharacterized protein LOC110436480 [Sorghum bicolor] | 0 |
| Q9ZT94 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1 | 0 | |
| TrEMBL | A0A2N9GZ53 | Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32476 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 25 | gene-QYE76_002067, gene-QYE76_002068, gene-QYE76_008283 ... |