Basic Information
Locus ID:
gene-QYE76_021237
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 58867481 | 58872235 | + | gene-QYE76_021237 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 100,916.01 Da | 45.69 | 76.31 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 113 | 248 | 2.5E-12 | - |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 589 | 831 | 9.9E-70 | IPR013103 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 589 | 872 | 2.0E-26 | IPR043502 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 480 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 513 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 322 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_021319258.1 | uncharacterized protein LOC110436480 [Sorghum bicolor] | 0 |
| Q9ZT94 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1 | 0 | |
| TrEMBL | Q94LQ7 | Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os10g40800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 25 | gene-QYE76_002067, gene-QYE76_002068, gene-QYE76_008283 ... |