halophFGD

Basic Information

Locus ID: gene-QYE76_021054

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Short Name: RUB1

Description: ubiquitin-NEDD8-like protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	53489778	53490342	-	gene-QYE76_021054

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.63	9,683.47 Da	38.35	111.29	0.13

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00240	Ubiquitin family	51	82	7.5E-10	IPR000626
SUPERFAMILY	SSF54236	Ubiquitin-like	1	84	2.26E-17	IPR029071
Gene3D	G3DSA:3.10.20.90	-	1	85	4.0E-24	-
SMART	SM00213	ubq_7	1	80	6.0E-8	IPR000626
ProSiteProfiles	PS50053	Ubiquitin domain profile.	1	84	17.64817	IPR000626
PRINTS	PR00348	Ubiquitin signature	55	76	1.6E-6	IPR019956
PRINTS	PR00348	Ubiquitin signature	11	31	1.6E-6	IPR019956

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K12158 (ubiquitin-like protein Nedd8)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT2G36170.1	Ubiquitin supergroup;Ribosomal protein L40e.	0
RefSeq	XP_051197138.1	ubiquitin-like [Lolium perenne]	0
Swiss-Prot	P19848	Ubiquitin OS=Coprinellus congregatus OX=5347 PE=1 SV=1	0
TrEMBL	A0A3L6RXW9	Ubiquitin-like domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM09G20060 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Eutrema salsugineum	1	Thhalv10027057m.g.v1.0
Brassicaceae	Brassica nigra	2	BniB04g047160.2N, BniB08g027520.2N
Poaceae	Lolium multiflorum	1	gene-QYE76_021054
Poaceae	Triticum dicoccoides	2	gene_TRIDC6BG024370, gene_TRIDC7BG056460